Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs146523032 chr11:33067057 CCT/C 1.59E-6 292 21.73 25.37 1.7 KM Plot
CESC rs146592551 chr5:96117839 C/T 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs1468102 chr11:3004526 C/G 4.49E-5 293 21.68 21.2 21.43 KM Plot
CESC rs147223455 chr5:96117800 G/A 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs147473555 chr1:59089948 C/G 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs147854084 chr10:81717524 G/A 4.01E-9 297 25.17 16.42 2.62 KM Plot
CESC rs1478566 chr3:161030335 A/T 9.81E-6 298 26.27 20.13 19.05 KM Plot
CESC rs1478568 chr3:161014276 C/T 6.07E-5 294 27.78 21.68 18.25 KM Plot
CESC rs148128838 chr11:62175817 CT/C 6.27E-6 295 21.17 23.73 4.4 KM Plot
CESC rs149016218 chr11:33101915 GTTTTC/G 0 293 22.4 23.22 0.5 KM Plot
CESC rs149788858 chr8:144404965 C/CA 2.44E-5 292 27.2 21.15 17.32 KM Plot
CESC rs149958925 chr5:96117624 G/GACTA 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs1520650 chr3:100360269 A/T 1.15E-5 297 22.4 19.3 12.05 KM Plot
CESC rs1541334 chr11:2993937 C/T 2.0E-5 292 21.13 22.88 21.43 KM Plot
CESC rs1574014 chr15:99236103 G/C 4.36E-5 296 21.2 23.43 11.6 KM Plot